Update mapping visualisation using new rsgislib functions.

Author: petebunting

08_lidar_forestry_regression/01_intro_and_explore_data.ipynb

@@ -178,7 +178,7 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "/home/pete/.conda/envs/osgeo-env-v3/lib/python3.9/site-packages/pandas/plotting/_matplotlib/core.py:386: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (`matplotlib.pyplot.figure`) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam `figure.max_open_warning`).\n",
+      "/home/pete/.conda/envs/osgeo-env-v9/lib/python3.10/site-packages/pandas/plotting/_matplotlib/core.py:512: RuntimeWarning: More than 20 figures have been opened. Figures created through the pyplot interface (`matplotlib.pyplot.figure`) are retained until explicitly closed and may consume too much memory. (To control this warning, see the rcParam `figure.max_open_warning`). Consider using `matplotlib.pyplot.close()`.\n",
       "  fig = self.plt.figure(figsize=self.figsize)\n"
      ]
     }
@@ -795,7 +795,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.9.10"
+   "version": "3.10.8"
   }
  },
  "nbformat": 4,

08_lidar_forestry_regression/02_feature_selection.ipynb

@@ -257,7 +257,27 @@
      "name": "stderr",
      "output_type": "stream",
      "text": [
-      "100%|██████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 9/9 [00:02<00:00,  4.33it/s]\n"
+      "  0%|                                                                                                       | 0/9 [00:00<?, ?it/s]/home/pete/.conda/envs/osgeo-env-v9/lib/python3.10/site-packages/sklearn/cluster/_agglomerative.py:983: FutureWarning: Attribute `affinity` was deprecated in version 1.2 and will be removed in 1.4. Use `metric` instead\n",
+      "  warnings.warn(\n",
+      " 11%|██████████▌                                                                                    | 1/9 [00:00<00:02,  3.98it/s]/home/pete/.conda/envs/osgeo-env-v9/lib/python3.10/site-packages/sklearn/cluster/_agglomerative.py:983: FutureWarning: Attribute `affinity` was deprecated in version 1.2 and will be removed in 1.4. Use `metric` instead\n",
+      "  warnings.warn(\n",
+      " 22%|█████████████████████                                                                          | 2/9 [00:00<00:01,  4.10it/s]/home/pete/.conda/envs/osgeo-env-v9/lib/python3.10/site-packages/sklearn/cluster/_agglomerative.py:983: FutureWarning: Attribute `affinity` was deprecated in version 1.2 and will be removed in 1.4. Use `metric` instead\n",
+      "  warnings.warn(\n",
+      " 33%|███████████████████████████████▋                                                               | 3/9 [00:00<00:01,  4.09it/s]/home/pete/.conda/envs/osgeo-env-v9/lib/python3.10/site-packages/sklearn/cluster/_agglomerative.py:983: FutureWarning: Attribute `affinity` was deprecated in version 1.2 and will be removed in 1.4. Use `metric` instead\n",
+      "  warnings.warn(\n",
+      " 44%|██████████████████████████████████████████▏                                                    | 4/9 [00:00<00:01,  4.14it/s]/home/pete/.conda/envs/osgeo-env-v9/lib/python3.10/site-packages/sklearn/cluster/_agglomerative.py:983: FutureWarning: Attribute `affinity` was deprecated in version 1.2 and will be removed in 1.4. Use `metric` instead\n",
+      "  warnings.warn(\n",
+      " 56%|████████████████████████████████████████████████████▊                                          | 5/9 [00:01<00:00,  4.16it/s]/home/pete/.conda/envs/osgeo-env-v9/lib/python3.10/site-packages/sklearn/cluster/_agglomerative.py:983: FutureWarning: Attribute `affinity` was deprecated in version 1.2 and will be removed in 1.4. Use `metric` instead\n",
+      "  warnings.warn(\n",
+      " 67%|███████████████████████████████████████████████████████████████▎                               | 6/9 [00:01<00:00,  4.18it/s]/home/pete/.conda/envs/osgeo-env-v9/lib/python3.10/site-packages/sklearn/cluster/_agglomerative.py:983: FutureWarning: Attribute `affinity` was deprecated in version 1.2 and will be removed in 1.4. Use `metric` instead\n",
+      "  warnings.warn(\n",
+      " 78%|█████████████████████████████████████████████████████████████████████████▉                     | 7/9 [00:01<00:00,  4.17it/s]/home/pete/.conda/envs/osgeo-env-v9/lib/python3.10/site-packages/sklearn/cluster/_agglomerative.py:983: FutureWarning: Attribute `affinity` was deprecated in version 1.2 and will be removed in 1.4. Use `metric` instead\n",
+      "  warnings.warn(\n",
+      " 89%|████████████████████████████████████████████████████████████████████████████████████▍          | 8/9 [00:01<00:00,  4.17it/s]/home/pete/.conda/envs/osgeo-env-v9/lib/python3.10/site-packages/sklearn/cluster/_agglomerative.py:983: FutureWarning: Attribute `affinity` was deprecated in version 1.2 and will be removed in 1.4. Use `metric` instead\n",
+      "  warnings.warn(\n",
+      "100%|███████████████████████████████████████████████████████████████████████████████████████████████| 9/9 [00:02<00:00,  4.14it/s]\n",
+      "/home/pete/.conda/envs/osgeo-env-v9/lib/python3.10/site-packages/sklearn/cluster/_agglomerative.py:983: FutureWarning: Attribute `affinity` was deprecated in version 1.2 and will be removed in 1.4. Use `metric` instead\n",
+      "  warnings.warn(\n"
      ]
     },
     {
@@ -415,27 +435,7 @@
      "output_type": "stream",
      "text": [
       "Using regularization parameter (alpha) for the Lasso estimator of: 0.461\n",
-      "['Skew', 'CanopyRR', 'Oligophotic_Prop', 'Euphotic_Prop', 'p_mean', 'p_kurtosis', 'p_variation', 'chm_rumple', 'chm_ruggedness', 'chm_vf', 'chm_vl', 'wv_midmin']\n"
-     ]
-    },
-    {
-     "name": "stderr",
-     "output_type": "stream",
-     "text": [
-      "/home/pete/.conda/envs/osgeo-env-v3/lib/python3.9/site-packages/sklearn/linear_model/_base.py:133: FutureWarning: The default of 'normalize' will be set to False in version 1.2 and deprecated in version 1.4.\n",
-      "If you wish to scale the data, use Pipeline with a StandardScaler in a preprocessing stage. To reproduce the previous behavior:\n",
-      "\n",
-      "from sklearn.pipeline import make_pipeline\n",
-      "\n",
-      "model = make_pipeline(StandardScaler(with_mean=False), LassoLars())\n",
-      "\n",
-      "If you wish to pass a sample_weight parameter, you need to pass it as a fit parameter to each step of the pipeline as follows:\n",
-      "\n",
-      "kwargs = {s[0] + '__sample_weight': sample_weight for s in model.steps}\n",
-      "model.fit(X, y, **kwargs)\n",
-      "\n",
-      "Set parameter alpha to: original_alpha * np.sqrt(n_samples). \n",
-      "  warnings.warn(\n"
+      "['N_Pulses', 'N_Returns', 'FCI', 'LCI', 'VCC', 'h75', 'IQR', 'Skew', 'Kurtosis', 'Closed_Vol', 'Open_Vol', 'Oligophotic_Vol', 'Euphotic_Vol', 'cvm_filled_vol', 'p_mean', 'p_scale', 'chm_rumple', 'chm_ruggedness', 'chm_roughness', 'chm_vf', 'chm_vl', 'chm_vd', 'wv_peaks', 'wv_auc', 'wv_min', 'wv_max', 'wv_width', 'wv_midmin', 'wv_midmax', 'wv_minmax', 'h90f', 'h95f', 'L_mean_f']\n"
      ]
     }
    ],
@@ -510,7 +510,7 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "3.9.10"
+   "version": "3.10.8"
   }
  },
  "nbformat": 4,