Move coding standards config processing script

With the additional support of a Guideline Recategorization Plan and
possible other further configuration options we are moving the script
into the generic configuration folder instead of the deviations folder.

Author: rvermeulen

.github/workflows/code-scanning-pack-gen.yml

@@ -86,7 +86,7 @@ jobs:
           codeql query compile --search-path c --search-path cpp --threads 0 c
 
           cd ..
-          zip -r codeql-coding-standards/code-scanning-cpp-query-pack.zip codeql-coding-standards/c/ codeql-coding-standards/cpp/ codeql-coding-standards/.codeqlmanifest.json codeql-coding-standards/supported_codeql_configs.json codeql-coding-standards/scripts/deviations codeql-coding-standards/scripts/reports
+          zip -r codeql-coding-standards/code-scanning-cpp-query-pack.zip codeql-coding-standards/c/ codeql-coding-standards/cpp/ codeql-coding-standards/.codeqlmanifest.json codeql-coding-standards/supported_codeql_configs.json codeql-coding-standards/scripts/configuration codeql-coding-standards/scripts/reports
 
       - name: Upload GHAS Query Pack
         uses: actions/upload-artifact@v2

docs/user_manual.md

@@ -265,16 +265,16 @@ The example describes three ways of scoping a deviation:
 3. The deviation for `A0-4-2` applies to any source element that has a comment residing on **the same line** containing the identifier specified in `code-identifier`.
 
 The activation of the deviation mechanism requires an extra step in the database creation process.
-This extra step is the invocation of the Python script `path/to/codeql-coding-standards/scripts/deviations/process_coding_standards_config.py` that is part of the coding standards code scanning pack. 
+This extra step is the invocation of the Python script `path/to/codeql-coding-standards/scripts/configuration/process_coding_standards_config.py` that is part of the coding standards code scanning pack.
 The script should be invoked as follows:
 
 ```codeql
-codeql database create --language cpp --command 'python3 path/to/codeql-coding-standards/scripts/deviations/process_coding_standards_config.py' --command <build_command> <output_database_name>
+codeql database create --language cpp --command 'python3 path/to/codeql-coding-standards/scripts/configuration/process_coding_standards_config.py' --command <build_command> <output_database_name>
 ```
 
 The `process_coding_standards_config.py` has a dependency on the package `pyyaml` that can be installed using the provided PIP package manifest by running the following command:
 
-`pip install -r path/to/codeql-coding-standards/scripts/deviations/requirements.txt`
+`pip install -r path/to/codeql-coding-standards/scripts/configuration/requirements.txt`
 
 
 ##### Deviation permit

integration-tests/deviations/build.sh

@@ -1,3 +1,3 @@
 #!/bin/bash
 
-~/codeql-home/codeqls/codeql-2.6.3/codeql database create --overwrite --language cpp --command "clang++ main.cpp" --command "python3 ../../scripts/deviations/process_coding_standards_config.py" ~/codeql-home/databases/deviations-test
+~/codeql-home/codeqls/codeql-2.6.3/codeql database create --overwrite --language cpp --command "clang++ main.cpp" --command "python3 ../../scripts/configuration/process_coding_standards_config.py" ~/codeql-home/databases/deviations-test